PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090440.1
Common NameMTR_2g090440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 218aa    MW: 24155.8 Da    PI: 6.7975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-101767455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                       +++E++RR++++  f++L ++lP+ +   p++  l   + + +A++YIksL+
  Medtr2g090440.1 17 ERKIVEKNRRNQMKILFSNLNSILPSyN---PKELaLPLPDQVDEAINYIKSLE 67
                     5689**********************66...55555****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-101182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-41171No hitNo description
PROSITE profilePS5088811.0331366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-91583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-61767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDHNQQGGQP SSSTKVERKI VEKNRRNQMK ILFSNLNSIL PSYNPKELAL PLPDQVDEAI  60
NYIKSLETNL KGAKEKKESL MGNKKRSRGG YGAKGSIIKL PKIEIHEMGS TLQVIVTCGV  120
DEHFIFCEIM RILHEENVEV ISSNSSLTGD SLLHTVHAQI PQTLLQFGAM KISQRLKAFV  180
NGSMSDVETG PLLWDLEIGS ESWELLDSIV TMSLPNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465109.11e-159transcription factor bHLH162
TrEMBLA0A072VAT41e-158A0A072VAT4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA06G44660.21e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-30bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]