PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090505.1
Common NameMTR_2g090505
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 323aa    MW: 36053.8 Da    PI: 9.4088
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090505.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.95.8e-07110189890
             FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 
                      +++GFs+ + ks +s  ng+    t+ C + g+  e k+k    +r++    ++C+  ++++      g+w ++  + +HnH+++
  Medtr2g090505.1 110 RKLGFSTIIGKSDNS-GNGRSAFVTLICERGGSYIEYKRK----SRREIAGSVKCESPFRLRGYLltGGEWSLKVSDGKHNHDMT 189
                      789********9999.788899**********99998777....66777777888888777766555***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-5110189IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPVLFSDMVV PIDASNVDPP EIEPPNALPL LLLEDAHDSG NAKSENPPPP PPKLEISLGG  60
SKAEDASPPI PSVVPPSVVA VCIDQREHFT AKHKFATRND LLEWVGEKSR KLGFSTIIGK  120
SDNSGNGRSA FVTLICERGG SYIEYKRKSR REIAGSVKCE SPFRLRGYLL TGGEWSLKVS  180
DGKHNHDMTD VLKGHKTVGR LNANERVHLE EMVDSNVPSR QMLTNLKKRN RTNSTTSKHV  240
YNASYRYRRS IRGTRNDMQH LLKSLVDNGY VYHCRKYHNS EVVSDVFWAH SDSIKLFNTF  300
SRDGNGYSMG RVLQCPSPYL HL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317280.0CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632927.11e-173protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072VC150.0A0A072VC15_MEDTR; FAR1 DNA-binding domain protein
STRINGAES623881e-179(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]