PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090515.1
Common NameMTR_2g090515
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 82aa    MW: 9755.2 Da    PI: 10.6968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090515.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-071743530
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.a 30
                      + +E++RR++++  +++L +llP+ +
  Medtr2g090515.1 17 RKVVEKNRRNQMKILYSKLNSLLPSyN 43
                     6789*********************44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-51442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-51443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-41743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MDHDQQECQP SSTKVERKVV EKNRRNQMKI LYSKLNSLLP SYNSKVLHFR FPSKLFPHQT  60
NKPIFHANLN YHPNRFMEVR S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g090515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465109.13e-17transcription factor bHLH162
TrEMBLA0A072VBH51e-52A0A072VBH5_MEDTR; Helix loop helix DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2677833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-07bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]