PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g091190.1
Common NameMTR_2g091190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 248aa    MW: 27363.1 Da    PI: 7.9764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g091190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.8e-1461107354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riNs +++Lr+++P a      Kl+Ka+ L +++ ++k+L
  Medtr2g091190.1  61 KNHSEAERRRRARINSHLDTLRSVIPGA-----NKLDKASLLAEVITHLKEL 107
                      58*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1451110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.24758107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-1261107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1462116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-571109No hitNo description
SuperFamilySSF550218.52E-5146223No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-5146189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEMDDFASSR INDGCFQGVN GNGYGSSSSL VLDREKGELV EAAVKLERKG VSPERSIEAL  60
KNHSEAERRR RARINSHLDT LRSVIPGANK LDKASLLAEV ITHLKELKTN AAQASEGLVI  120
PKDSDEIRVE SQEGGLNGLP YSIRASLCCE YKPGLLSDIR KALDALHLMI IRAEIATLGG  180
RMKNVFVIIS CKEQNFEDAE YRQFLAGSVH QALRSVLDRF SVSQDILETR KRRRISIFSS  240
SSLGDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229233RKRRR
2230234KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.158671e-171root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g091190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465233.11e-179transcription factor bHLH30
TrEMBLA0A072VCU01e-178A0A072VCU0_MEDTR; Putative transcription factor bHLH family
STRINGXP_004487166.11e-142(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-33bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]