PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g093960.1
Common NameMTR_2g093960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 415aa    MW: 46520.2 Da    PI: 9.2409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g093960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-066183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F+r  nL+ H r H
  Medtr2g093960.1 61 FICEVCNKGFKRDQNLQLHRRGH 83
                     89*******************88 PP
2zf-C2H211.50.0009138160123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H + +
  Medtr2g093960.1 138 WKCDKCSKKYAVQSDWKAHSKIC 160
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.14E-86083No hitNo description
SMARTSM003550.0136183IPR015880Zinc finger, C2H2-like
PfamPF121711.8E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355100103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.14E-8133158No hitNo description
SMARTSM00355150138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MMSEEAVSDT SNFRGTSNSN PNPPNPNSNS VKRKRSLPGT PDPDSEVIAL SPKSLMTSNR  60
FICEVCNKGF KRDQNLQLHR RGHNLPWKLK QRNKLEVIRK KVYVCPEKSC VHHDPSRALG  120
DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTKEYRCDCG TLFSRKDSFL  180
THRAFCESLV EGSARIGSVP AVISNFGNNL LINTQAPRNI PHGLFGLNPE YGGSGQETFM  240
GNFPNNNIPH HSYLPNSSAF SSSGANSDLE LVHTFGLLPQ GQWMNYRYND QHAETSFTSS  300
GVLKLEQQQQ EDKMHDLSHL YSQNQLQGCP SHVSTMQNTT TKVINGNNIV EVKKLFNHGN  360
HATNFNEDQL SLTRDFLGVG DDSLKRTLLQ QEMIPRFNPI GSVTNLQSEF GGHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33134199368Zinc finger protein JACKDAW
5b3h_F3e-33134199368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189100KQRNKLEVIRKK
2381386DSLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g093960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411080.0AC141108.3 Medicago truncatula clone mth2-22g6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631650.10.0protein indeterminate-domain 9
RefseqXP_024631651.10.0protein indeterminate-domain 9
TrEMBLG7IKT30.0G7IKT3_MEDTR; C2H2-type zinc finger protein
STRINGAES674600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-100C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]