PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g094570.3
Common NameMTR_2g094570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 700aa    MW: 77570.7 Da    PI: 8.1304
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g094570.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24108209199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + 
  Medtr2g094570.3 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RA 197
                      89****************************986445444..8************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Medtr2g094570.3 198 ESGELFVGIRRA 209
                      99********97 PP
2Auxin_resp115.45.1e-38271354183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Prast+eF++k++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Medtr2g094570.3 271 AMRLAASNQTFEVVYYPRASTPEFCIKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVVDPIRWPNSPWRLLQ 354
                      567899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-3899211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29102210IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-21107208No hitNo description
PROSITE profilePS5086313.267108210IPR003340B3 DNA binding domain
SMARTSM010194.4E-23108210IPR003340B3 DNA binding domain
PfamPF023627.1E-23108209IPR003340B3 DNA binding domain
PfamPF065074.8E-33271354IPR010525Auxin response factor
PROSITE profilePS5174517.315587667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKVAEKSLDP QLWHACAGGM VQMPSVNTKV FYFPQGHAEH AQSNVDFGDS FRIPPLILCR  60
VASVKFLADS ETDEVFSKIT LIPLRNSELE NDDSDGDGSE NSEKPASFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYS AEPPVQTVIA KDVHGEVWKF RHIYRGTPRR HLLTTGWSSF  180
VNQKKLVAGD SIVFLRAESG ELFVGIRRAK RGIVNGLETP SGWSSGNGNC GLGPYGGAFT  240
AFLREENKLG GVGGNLGGGR VKVSGESVKE AMRLAASNQT FEVVYYPRAS TPEFCIKTSA  300
VKAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVV DPIRWPNSPW RLLQVTWDEP  360
DLLHNVKRVS PWLVELVSNM SMIHLAPFSP PRKKLRFPQH PDFPLDVVQF QIPTFSGNPF  420
NPLCCLSSSD NYNAPAAGIQ GARHAQIGIS LSDLHLNNNK FQLGVFPNNR ETISNVSNIT  480
TNHDNKSKES ISCLLTIGNS HKRSLEIKSD NNDNRHQFLL FGQPILTEQQ ISRKDSSDDV  540
LLSKKKDKEK WFFSDTTQSS ISEQFSPAKS STTSASADFC WQLGLDTGHC KVFLESEDVG  600
RTLDLSCVGS YEELYRKLAK MFGIERSEML SRVLYRDATG AVKQTGEEPF SDFMKTAKRL  660
TILMDSGSKD TRRVCITGTR NAERGLDASN KTGPMSIFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-77837551388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.198900.0glandular trichome| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g094570.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2076000.0AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465298.10.0auxin response factor 10
RefseqXP_024632564.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLG7IRU10.0G7IRU1_MEDTR; Auxin response factor
STRINGAES675070.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]