PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g095520.1
Common NameMTR_2g095520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 321aa    MW: 36454.9 Da    PI: 7.3896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g095520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Medtr2g095520.1 14 KGPWSPEEDTKLKEYIEKHGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.62.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Medtr2g095520.1  69 GEFSDEEDRIICTLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.628962IPR017930Myb domain
SuperFamilySSF466891.16E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002492.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001672.99E-91662No hitNo description
PROSITE profilePS5129422.16363117IPR017930Myb domain
SMARTSM007177.2E-1267115IPR001005SANT/Myb domain
PfamPF002494.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2470117IPR009057Homeodomain-like
CDDcd001671.00E-770111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTKLKEYIE KHGTGGNWIS LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC TLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMNL  120
LPQSHNTVLP YLTSSSFPSH CTSYFNQTPT NTSFTTSLEQ QFSVPSSSSS ISLPFYHNQE  180
SLLNGFSSNT NTNISMQYQL QNPMMKESLV MFGSEGSCCS SSDGSLGKQE EIMGFQNFMQ  240
INKFNLSHGS DVVDVNNQWE REKVNLCFSQ NHEKQITSTT PLDYDLEYIK QLISSNSGSC  300
NNGYLSIDEN KMEEKTMYYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.251860.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g095520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392271e-101BT139227.1 Lotus japonicus clone JCVI-FLLj-1K11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465364.10.0transcription factor RAX2
TrEMBLA0A072VBN00.0A0A072VBN0_MEDTR; Myb transcription factor
STRINGXP_004487066.11e-131(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-73myb domain protein 36
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]