PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g096540.1
Common NameMTR_2g096540, MtrDRAFT_AC149210g6v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 134aa    MW: 15145.8 Da    PI: 9.8963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g096540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000273456123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ C+k Fs+   L  H  +H
  Medtr2g096540.1 34 FKCKTCNKEFSSFQALGGHRASH 56
                     89**********99999998887 PP
2zf-C2H212.90.000327395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++Cp+Cg  Fs    L  H+r+H
  Medtr2g096540.1 73 HPCPICGLEFSIGQALGGHMRKH 95
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.2E-123458IPR007087Zinc finger, C2H2
SMARTSM003550.0713456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5123461IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-83495No hitNo description
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-47197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.97473100IPR007087Zinc finger, C2H2
PfamPF139123.7E-87396IPR007087Zinc finger, C2H2
SMARTSM003550.187395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKRGREDKSE LNCLMLLSKV GETKEPNTLK ECGFKCKTCN KEFSSFQALG GHRASHKRPK  60
LMYKLPNMKP KMHPCPICGL EFSIGQALGG HMRKHNSSFS IFKKSKKDHC ERLNFCLDLN  120
LTPLENGLVW TCT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g096540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397070.0AC139707.10 Medicago truncatula clone mth2-16b22, complete sequence.
GenBankAC1492100.0AC149210.2 Medicago truncatula chromosome 2 clone mth2-38k7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342289.12e-48zinc finger protein ZAT11-like
SwissprotQ424539e-31ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLQ2HU631e-92Q2HU63_MEDTR; C2H2 type zinc finger transcription factor family protein, putative
STRINGAES675902e-93(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-32C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]