PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097380.1
Common NameMTR_2g097380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 564aa    MW: 64537.9 Da    PI: 7.8492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.42.7e-8623056010373
             GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                      + +s +d ++a++lL+++++++sp+gd +qRla++f +AL+arl +              s    ++ + a++++s ++P+ k++ +  N a+l
  Medtr2g097380.1 230 QSISCNDISNANQLLNQIKKHSSPTGDGTQRLAHFFENALEARLKK--------------S---ATDMIRAYQVYSSACPFEKLAIIFSNDAVL 306
                      568889***************************************9..............2...5689************************** PP

             GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                        +++ e +HiiDf++++G++Wpa+++ L++R++gpp+lRiTg++ p+  s e+++etg rLa+++++++vpfe+n  +ak++e++++e+++++
  Medtr2g097380.1 307 YVAKETESLHIIDFGVGYGFKWPAFIHRLSKRSGGPPKLRITGIDLPN--SLERVKETGLRLASYCKRFNVPFEYNG-IAKNWESIKVEDFKIR 397
                      **********************************************87..9**************************.7*************** PP

             GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErell 290
                      ++E +aVn+ ++ ++llde+v +e+++ +vL+l+++++P++++++  +  ++++ F++rf ea+ +ysalfd+l ++++ re+  r + E+++ 
  Medtr2g097380.1 398 KNEFVAVNCLFKFENLLDETVVSENPKGDVLDLIRKTNPNIFIHSIVNGGYDEPFFVTRFKEAVFHYSALFDTLdHNNVEREDPIRLMFEEVFW 491
                      **************************************************************************9999**************** PP

             GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      g++i+nv+aceg +r+er et+++W++r    GF+    +++a          ++sd +  e +++++++gWk+r L+  S+W
  Medtr2g097380.1 492 GKDIMNVIACEGCDRVERPETYRHWHSRHIVNGFRL---RNDA----------YNSD-FLFEVNENWMLQGWKGRILFGSSCW 560
                      *****************************9999973...3332..........3444.88999999***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3004.4E-64376IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5098547.973195555IPR005202Transcription factor GRAS
PfamPF035149.2E-84230560IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MVSQRKGQHA SGLSCRSGFH KVAVNSFYEI PSKNRREYVV GDVRQFPLAV SFVMTINKSQ  60
GQSLRHVELF LPTVTSREGL KILINNKDGE DIDVTSNIVL AHKTRVVARV KDLVDSYNYN  120
YNPFLLPNTP PFSPNNFVSQ SNSTLFPSFN NALSHDAIQT ENFEEEHFLN VSQNGSEQLH  180
VGDTSELSEL FDKVLVLGTK FTKGLLRNTS FQQNEELSNR FYGSRRQRTQ SISCNDISNA  240
NQLLNQIKKH SSPTGDGTQR LAHFFENALE ARLKKSATDM IRAYQVYSSA CPFEKLAIIF  300
SNDAVLYVAK ETESLHIIDF GVGYGFKWPA FIHRLSKRSG GPPKLRITGI DLPNSLERVK  360
ETGLRLASYC KRFNVPFEYN GIAKNWESIK VEDFKIRKNE FVAVNCLFKF ENLLDETVVS  420
ENPKGDVLDL IRKTNPNIFI HSIVNGGYDE PFFVTRFKEA VFHYSALFDT LDHNNVERED  480
PIRLMFEEVF WGKDIMNVIA CEGCDRVERP ETYRHWHSRH IVNGFRLRND AYNSDFLFEV  540
NENWMLQGWK GRILFGSSCW VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4221256210380Protein SCARECROW
5b3h_A5e-422125629379Protein SCARECROW
5b3h_D5e-422125629379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597371.20.0scarecrow-like protein 33
SwissprotQ9XE581e-139SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7IRU80.0G7IRU8_MEDTR; GRAS family transcription factor
STRINGAES676210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-141SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]