PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097410.1
Common NameMTR_2g097410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 744aa    MW: 84140.6 Da    PI: 5.3175
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.24.1e-1153687401373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avs++d++ a++lL+++++++sp+gd+ qR+a+yf++A++ar+++ ++++   +   +++  + ++ l+a+++f  ++P+ kf+
  Medtr2g097410.1 368 LRTLLVLCAQAVSANDNRTANELLKQIRNHSSPSGDASQRMAHYFANAIEARMVGAGTGTQ--ILYMSQKMFSAADFLKAYQVFISACPFKKFA 459
                      5789***************************************************655554..33333334569******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h+ aN++Il+ +e++e++HiiDf+i +G+QWp L++ L++ ++gpp+lRiTg++ p++g   +e++eetg+rLa+++e+++v+fe++++ ++++
  Medtr2g097410.1 460 HFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKVEGGPPKLRITGIEYPQAGfrPAERIEETGRRLANYCERFNVSFEYKAIPSRNW 553
                      **********************************************************9*****************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E++aVn+ ++ ++l+de+ +++s++d+vLkl+++++P+++v +  + ++n++ F +rf e+l +ysa+fd++++ ++re+e
  Medtr2g097410.1 554 ETIQIEDLNIKSNEVVAVNCLVRFKNLHDETIDVNSPKDAVLKLIRKINPHIFVQSIVNGSYNAPFFSTRFKESLFHYSAMFDMYDTLISRENE 647
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +r+++Ere+lgrei+nvvaceg+er+er et+++W+ r  +aGF+++pl+++++   +  lr+ + + +  +e+++++++gWk+r +++   W
  Medtr2g097410.1 648 WRSMIEREFLGREIMNVVACEGFERVERPETYKQWQVRNLRAGFRQLPLDKEVMVRFRDKLREWYHKDFVFDEDNNWMLQGWKGRIMYASAGW 740
                      *****************************************************************888********************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.014342721IPR005202Transcription factor GRAS
PfamPF035141.4E-112368740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MDPNFVGFET TYKFDDHGNL ILLSDPNPNL DDFTITNPYV GPSNSEPLVF SSDTTKDSTF  60
EDADFSETVK YISQILMEEE FEQKPCMCYD PLSLQHTEKI FFDALESNLP LSPNQHPLDV  120
LEIPNSTCCV TTDSGNSSSS NELKPLSPDT PVSGGDSGFN SVKSQFIVPN HGLNLSNSNI  180
SDGVFDLDSS ETRVMAQNIF SDADSILQFR KGLEEASKFL PQKAQLFTGF QNASDSLVSH  240
EPKGRVGVIK MEGGVRENSN SSYSSSNLNS GYSSSNSNSH GLLKSRKNHE RQESDDEEGR  300
INKQSAVSVE ESEISDMFDR VLLSVENVPL CAEQKDGSMV ESRTQVGELD GGKMRSKKQG  360
RKRDAVDLRT LLVLCAQAVS ANDNRTANEL LKQIRNHSSP SGDASQRMAH YFANAIEARM  420
VGAGTGTQIL YMSQKMFSAA DFLKAYQVFI SACPFKKFAH FFANKMILKT AEKAETLHII  480
DFGILYGFQW PILIKFLSKV EGGPPKLRIT GIEYPQAGFR PAERIEETGR RLANYCERFN  540
VSFEYKAIPS RNWETIQIED LNIKSNEVVA VNCLVRFKNL HDETIDVNSP KDAVLKLIRK  600
INPHIFVQSI VNGSYNAPFF STRFKESLFH YSAMFDMYDT LISRENEWRS MIEREFLGRE  660
IMNVVACEGF ERVERPETYK QWQVRNLRAG FRQLPLDKEV MVRFRDKLRE WYHKDFVFDE  720
DNNWMLQGWK GRIMYASAGW VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-513517421379Protein SCARECROW
5b3h_D1e-513517421379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.102400.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597373.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7IRV10.0G7IRV1_MEDTR; GRAS family transcription factor
STRINGAES676240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]