PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097467.1
Common NameMTR_2g097467
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 657aa    MW: 74704.1 Da    PI: 5.9682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097467.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.8e-1102886533373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L +cA+av+s d++++++lL+++++++sp gd +qRla+yf+++L+ rla       ++ + ++    +  + l+a+klf+ +sP+ ++++ 
  Medtr2g097467.1 288 TMLNQCAQAVASYDQRNTDELLKQIRQHSSPFGDGLQRLAHYFANGLEIRLAA------ETPSYQPLYVATAGDMLKAYKLFVTASPLQRMTNA 375
                      5799************************************************9......333334444444679******************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +  ++I + v++e+ vH+iDf+i +G+QWp+L ++L+ Rp+gpp+lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+n+ +a+++e+
  Medtr2g097467.1 376 LLTKTIFKIVKNESSVHVIDFGICYGFQWPCLVRKLSLRPGGPPKLRITGIELPQRGfrPAERVEETGRRLANYCKKFNVPFEYNF-IAQKWET 468
                      *******************************************************99*****************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++l++L+++++E + V++ ++l++l+de+v+l+ +r++vLkl+++++Pkv+ +   + ++n++ Fl+rf eal+++s+lfd++ea++pre+ +r
  Medtr2g097467.1 469 IRLKDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAVLKLIRKINPKVFFHGVANGSYNAPFFLTRFKEALYHFSSLFDMFEANVPREDTQR 562
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++Er l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++l+++ +++ k++++k + + + v+ + ++++ gWk+r L+++SaW
  Medtr2g097467.1 563 SMLERGLFGRDAINVIACEGAERVERPETYKQWQVRNKRAGFKQIRLDSDLVNETKAMVKKEYHKDFVVDVDCKWVLKGWKGRILYALSAW 653
                      ***************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.064260634IPR005202Transcription factor GRAS
PfamPF035146.1E-108288653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLSPNTFLQD FSVPNSVNQV TNGFELEDSP SSPSSSGTSS NGESLETTRY SNNILRYIND  60
ILMDEEDDLE QKPCMLQECL RLQAAEKSFY DVLGHNQPSP NDSTDPDGNF DHDASFERNG  120
SSYTTDNSYE SNWVNHVVEF DSSSIQLQTP LIEKNYDDLT EADPVVIETR GDKHFCNGTW  180
SWNDIQPVTV KEVSPSTVPE KRSHKMDNDN GTCNEQEGRA SKVSAIFSDE LEPPEILDEV  240
LLYQTGKTLT QHQQASYNYD SGGKEKETHS LLKKASTTKN VAAVDLWTML NQCAQAVASY  300
DQRNTDELLK QIRQHSSPFG DGLQRLAHYF ANGLEIRLAA ETPSYQPLYV ATAGDMLKAY  360
KLFVTASPLQ RMTNALLTKT IFKIVKNESS VHVIDFGICY GFQWPCLVRK LSLRPGGPPK  420
LRITGIELPQ RGFRPAERVE ETGRRLANYC KKFNVPFEYN FIAQKWETIR LKDLKIDRNE  480
ITLVSCLYRL KNLPDETVAL NCPREAVLKL IRKINPKVFF HGVANGSYNA PFFLTRFKEA  540
LYHFSSLFDM FEANVPREDT QRSMLERGLF GRDAINVIAC EGAERVERPE TYKQWQVRNK  600
RAGFKQIRLD SDLVNETKAM VKKEYHKDFV VDVDCKWVLK GWKGRILYAL SAWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4529265524379Protein SCARECROW
5b3h_D2e-4529265524379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.152950.0glandular trichome| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1837530.0AC183753.4 Medicago truncatula chromosome 2 BAC clone mth2-26g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465417.10.0scarecrow-like protein 11
TrEMBLA0A072VCF80.0A0A072VCF8_MEDTR; GRAS family transcription factor
STRINGAES676280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-169GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]