PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g098880.1
Common NameMTR_2g098880
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 253aa    MW: 29300.7 Da    PI: 6.1443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g098880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.38.5e-2676165290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY+ Y++++GF+vr++++++s+ n+e + ++fvCskeg+r+++  +++++    + + tr gC+a++++ ++++gkw+vtk+++eH+H+l+
  Medtr2g098880.1  76 FYDGYGRRIGFTVRIHHNRRSRVNNELIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLM 165
                      9*****************************************99883333.2448899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2276165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMDHQSGQGF DSDGSDFDVL AEISEKHEKV EDEFTNSLEL CTGEDKEFVE QPVADSDTLE  60
PFIGMQFNSR EEARGFYDGY GRRIGFTVRI HHNRRSRVNN ELIGQDFVCS KEGFRAKKYV  120
HRKDRVLPPP PATREGCQAM IRLALRDEGK WVVTKFVKEH THKLMSPGEV PWRGSGKHLV  180
SEDEKDRRIR ELSLELHNER QKYKRRCAAY EEQLNTILND LEKHTEHISK KVADVVQNIR  240
EIEEEKSDSD GR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g098880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465740.0AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597516.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024632575.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072VD010.0A0A072VD01_MEDTR; FAR-RED impaired response-like protein
TrEMBLG7IHU50.0G7IHU5_MEDTR; FAR-RED impaired response-like protein
STRINGAES677670.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-44FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]