PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099155.1
Common NameMTR_2g099155
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 242aa    MW: 26673 Da    PI: 8.466
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099155.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-074791243
                     SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksr 43
                     + W++eE+ +l d+ +++ ++    + ++Ia+ ++ ++t  ++ +r
  Medtr2g099155.1 47 LDWSPEEQSILEDGLTKYASEssiaRYAKIAQQLN-NKTVRDVALR 91
                     57*********************************.9999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-541102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-549103IPR009057Homeodomain-like
CDDcd001672.43E-54998No hitNo description
PfamPF125799.2E-15182215IPR022228Protein of unknown function DUF3755
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MANPSGTGGN HQEQHTQVNP SSFNGNSVPE TSSGLVMNMK HNPGISLDWS PEEQSILEDG  60
LTKYASESSI ARYAKIAQQL NNKTVRDVAL RVRWMNKKEN SKRRKDDHNL SRKSKDKKER  120
VSDPAAKSSH FAARPSVPPY APPMITMDND DGIPYSAIGG PTAELLEQNA QTMTQISANL  180
SSLQLQENIN LLCQTRDNII RIMNEMNDSP AVMKQMPPLP VKMNEELSRS ILPGTSLHPQ  240
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118RKSKDKKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.264220.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465461.11e-179uncharacterized protein LOC25487913 isoform X2
TrEMBLA0A072VD211e-178A0A072VD21_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004486880.11e-151(Cicer arietinum)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]