PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099430.1
Common NameMTR_2g099430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 117aa    MW: 13451.9 Da    PI: 10.1177
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71e-1425104990
             FAR1   9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +v F vrk + +k+k++++i + +fvCskeg ++ +k++    + ++++ + +Cka + +  + +gk+++++++ eHn +l+
  Medtr2g099430.1  25 MVNFGVRKCYANKNKNDNTISSFRFVCSKEGLQKASKSD-PFVKIHNVKAKKNCKAIISLVYK-NGKFVIYEFVDEHNRALQ 104
                      688********************************9999.788889999***********999.**************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1125104IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MLCLMNQPLK IHIMNFFIPL TPQEMVNFGV RKCYANKNKN DNTISSFRFV CSKEGLQKAS  60
KSDPFVKIHN VKAKKNCKAI ISLVYKNGKF VIYEFVDEHN RALQNLETTH MLIVDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1463081e-153AC146308.2 Medicago truncatula clone mth2-10a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490690.12e-27protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027193270.16e-28LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5, partial
TrEMBLG7IS155e-80G7IS15_MEDTR; FAR1 DNA-binding domain protein
STRINGAES677958e-81(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-09FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]