PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g101190.1
Common NameMTR_2g101190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92138.5 Da    PI: 6.5764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g101190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-181472357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Medtr2g101190.1 14 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 72
                     5679*****************************************************97 PP
2START175.82.6e-551583662205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l
  Medtr2g101190.1 158 IAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIIAISHGCHGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDILNVLPTAngGTIEL 250
                      7899******************************************************.8888888888****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rd + +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+
  Medtr2g101190.1 251 LYMQLYAPTTLAPaRDLWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 344
                      ********************************************9988899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s+++ ++kt++ +l+++++
  Medtr2g101190.1 345 LYESSTMLAQKTTMVALRHLRQ 366
                      **************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.111973IPR001356Homeobox domain
SMARTSM003891.3E-151177IPR001356Homeobox domain
SuperFamilySSF466899.41E-171477IPR009057Homeodomain-like
CDDcd000863.87E-161474No hitNo description
PfamPF000468.0E-161572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-181672IPR009057Homeodomain-like
CDDcd146861.71E-666105No hitNo description
PROSITE profilePS5084824.677148349IPR002913START domain
CDDcd088751.57E-78152367No hitNo description
Gene3DG3DSA:3.30.530.202.3E-22157363IPR023393START-like domain
SuperFamilySSF559611.19E-36157366No hitNo description
SMARTSM002341.1E-41157367IPR002913START domain
PfamPF018521.1E-52158366IPR002913START domain
PfamPF086702.0E-49693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSCKDGKGVM DNGKYVRYTP EQVEALERLY HDCPKPSSIR RQQLIRECPI LSHIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ AVNRKLSAMN KLLMEENDRL QKQVSHLVYE NGYFRQHTQN  120
TNLATKDTSC DSAVTSGQRS LTAQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM  180
PGMKPGPESI GIIAISHGCH GVAARACGLV GLEPTRVAEI LKDRPSWYRD CRAVDILNVL  240
PTANGGTIEL LYMQLYAPTT LAPARDLWLL RYTSVLEDGS LVICERSLKN TQNGPSMPPV  300
QHFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPWSVPE VLRPLYESST MLAQKTTMVA  360
LRHLRQISHE VSQSNVTGWG RRPAALRALG QRLSRGFNEA LNGFTDEGWS MIGNDGVDDV  420
TILVNSSPDK LMGLNLSFAN GFPSVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN  480
NMDAYSAAAI KAGPCSFSGS RVGNYGGQVI LPLAHTIEHE EFLEVIKLEG IAHSPEDAIM  540
PREVFLLQLC SGMDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SGKEVANNPN  600
RTLDLTSALD IGPAGNKASN DYSGNSGCMR SVMTIAFEFA FESHMQDHVA SMARQYVRSI  660
ISSVQRVALA LSPSNLNSQG GLRTPLGTPE AQTLARWISN SYRCFLGAEL LKSNNEGSES  720
LLKSLWHHTD AILCCTLKAL PVFTFANQAG LDMLETTLVA LQDIALEKIF DDHGRKILCS  780
EFPLIIQQGF ACLQGGLCLS SMGRPISYER VVAWKVLNEE ENAHCICFMF VNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.84120.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g101190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597690.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLG7II120.0G7II12_MEDTR; Class III HD-Zip protein CNA1
STRINGAES679410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]