PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g101460.1
Common NameMTR_2g101460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 212aa    MW: 24801.1 Da    PI: 9.6091
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g101460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.4e-2470159290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      fYn YA++ GFs r++k +++k+n+ i+++ fvC+++g+re++ ++ + ++r+ ra tr+gC+ak  v+ ++ +  w+v +++++HnH+l+
  Medtr2g101460.1  70 FYNWYARMNGFSARRRKVRRNKNNE-IIQQIFVCYRQGFREKKLENnKIRKREARADTRCGCDAKCSVHIDSgSRCWYVWDFNNDHNHSLV 159
                      9*******************96555.***************9988845678889*****************9999**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.7101.5E-44597IPR023141Ammonia/methane monooxygenase, subunit B, helix hairpin domain
PfamPF031012.2E-2270159IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MANSNNEQIM SSSENTSQFM EFGDIESDMK VGFGFAIQGM EDIGKIDFKK LNASDVMKFH  60
FPNIAVAYAF YNWYARMNGF SARRRKVRRN KNNEIIQQIF VCYRQGFREK KLENNKIRKR  120
EARADTRCGC DAKCSVHIDS GSRCWYVWDF NNDHNHSLVD DDFIAIQRFF LQTNNLMPST  180
VTPETKIKHR LWNYTKFKEL TRSVINQTLN G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.228790.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g101460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1381300.0AC138130.9 Medicago truncatula clone mth2-31d24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597711.11e-159putative protein FAR1-RELATED SEQUENCE 10
TrEMBLG7IUN81e-157G7IUN8_MEDTR; FAR1 DNA-binding domain protein
STRINGAES679621e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-15FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]