PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g101460.2
Common NameMTR_2g101460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 202aa    MW: 23883.3 Da    PI: 9.7344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g101460.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.33e-2460149290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      fYn YA++ GFs r++k +++k+n+ i+++ fvC+++g+re++ ++ + ++r+ ra tr+gC+ak  v+ ++ +  w+v +++++HnH+l+
  Medtr2g101460.2  60 FYNWYARMNGFSARRRKVRRNKNNE-IIQQIFVCYRQGFREKKLENnKIRKREARADTRCGCDAKCSVHIDSgSRCWYVWDFNNDHNHSLV 149
                      9*******************96555.***************9988845678889*****************9999**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.7101.4E-43587IPR023141Ammonia/methane monooxygenase, subunit B, helix hairpin domain
PfamPF031012.0E-2260149IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MYIFCLHQFM EFGDIESDMK VGFGFAIQGM EDIGKIDFKK LNASDVMKFH FPNIAVAYAF  60
YNWYARMNGF SARRRKVRRN KNNEIIQQIF VCYRQGFREK KLENNKIRKR EARADTRCGC  120
DAKCSVHIDS GSRCWYVWDF NNDHNHSLVD DDFIAIQRFF LQTNNLMPST VTPETKIKHR  180
LWNYTKFKEL TRSVINQTLN G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.228791e-177root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g101460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1381300.0AC138130.9 Medicago truncatula clone mth2-31d24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597711.11e-146putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A072VD751e-150A0A072VD75_MEDTR; FAR1 DNA-binding domain protein
STRINGAES679621e-145(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-15FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]