PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g101720.1
Common NameMTR_2g101720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 795aa    MW: 88414.3 Da    PI: 6.0832
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g101720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21140195156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+k +++t+eq++++e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Medtr2g101720.1 140 RKKYHRHTSEQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 195
                      7999************************************************9877 PP
2START230.45.2e-723125334206
                      HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ++a++el+k+a+ +ep+W +s     e++n+de++++f+++++      +s+ea+r++gvv+++l++ v+ +ld + qW+e+++    ka+t++
  Medtr2g101720.1 312 NQAMEELIKMATMGEPMWLRSLetgrEILNYDEYMKEFADENSdhgrpkRSIEASRDTGVVFADLPRIVQCFLDAN-QWKEMFPclisKAATVD 404
                      789*************************************999*********************************.***************** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                      +i++g      ga+qlm+aelq+l+p+vp R+++fvRy+++l++++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh 
  Medtr2g101720.1 405 TICKGegsnknGAVQLMFAELQMLTPMVPtREVYFVRYCKRLSGEKWAIVDVSIDKVEDNI-DKSLVKCRKRPSGCIIEDKSNGHCKVVWVEHL 497
                      ***********************************************************98.9******************************* PP

                      E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h+++r +v+sgla+ga++w atlq qce+
  Medtr2g101720.1 498 ECQKSIVHSMYRTIVNSGLAFGARHWIATLQLQCER 533
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23127191IPR009057Homeodomain-like
SuperFamilySSF466898.36E-21128198IPR009057Homeodomain-like
PROSITE profilePS5007118.22137197IPR001356Homeobox domain
SMARTSM003895.1E-19139201IPR001356Homeobox domain
PfamPF000468.2E-19140195IPR001356Homeobox domain
CDDcd000866.01E-17144195No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
PROSITE profilePS5084838.448300536IPR002913START domain
SuperFamilySSF559613.3E-33304533No hitNo description
CDDcd088756.45E-107305532No hitNo description
SMARTSM002341.2E-70309533IPR002913START domain
PfamPF018521.1E-57311533IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-6360527IPR023393START-like domain
SuperFamilySSF559611.32E-13562786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MTQPLLLLLK KHNTLLSSPT LSMCADMSNN NPPSTSKAKD FFPSPALSLS LAGIFRHGGG  60
AAAEGEGGSI SNMEVEEGEE GSTIGGERVE EISSEYSGPA KSKSIDEYEG DELEDDEGED  120
DEGDGDGDGD GVNKNKKKKR KKYHRHTSEQ IRVMEALFKE SPHPDEKQRQ QLSKQLGLAP  180
RQVKFWFQNR RTQIKAIQER HENSLLKSEI EKLREKNKTL RETINKACCP NCGVPTTNRD  240
GTMATEEQQL RIENAKLKAE VERLRAALGK YASGTMSPSC STSHDQENIK SSLDFYTGIF  300
CLDESRIMDV VNQAMEELIK MATMGEPMWL RSLETGREIL NYDEYMKEFA DENSDHGRPK  360
RSIEASRDTG VVFADLPRIV QCFLDANQWK EMFPCLISKA ATVDTICKGE GSNKNGAVQL  420
MFAELQMLTP MVPTREVYFV RYCKRLSGEK WAIVDVSIDK VEDNIDKSLV KCRKRPSGCI  480
IEDKSNGHCK VVWVEHLECQ KSIVHSMYRT IVNSGLAFGA RHWIATLQLQ CERLVFFMAT  540
NVPMKDSTGV ATLAGRKSIL KLAQRMTWSF CQAISASSFH TWTKVTSKTG EDIRISSRKN  600
LNDPSEPLGL IVCAVSSIWL PISPNVLFDF LRDETRRTEW DIMSNGGTVQ SIANLAKGQD  660
RGNAVTIQTI KSKENNMWIL QDSCTNSYES MVVYAPADIT GIQSVMTGCD SSNLAILPSG  720
FSIVSDGLES RQMVITSRRE EKNTEGGSLF TIAFQILTNA SPTAKLTMES VDSMNSLVSC  780
TLRHIKTSLN CEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140KKKKRK
2135141KKKKRKK
3137141KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g101720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597736.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLG7IUR30.0G7IUR3_MEDTR; Homeobox leucine zipper protein
STRINGAES679870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]