PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g103290.1
Common NameMTR_2g103290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 182aa    MW: 20367.9 Da    PI: 9.1381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g103290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.2e-071539226
                     -S---SGGGGTS--TTTT.T-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGd.rCkFaHg 26
                     kt lCr+f++ GtC+  + +C++aHg
  Medtr2g103290.1 15 KTQLCRRFMQ-GTCPLVApQCNYAHG 39
                     89********.*****855******9 PP
2zf-CCCH25.42.4e-084971325
                     S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                      +lCr f+ t +C+yG++C+F H
  Medtr2g103290.1 49 PRLCRMFMHTRHCSYGNNCRFLH 71
                     69********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.6E-11945IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-61045IPR000571Zinc finger, CCCH-type
SMARTSM003560.00111340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.311341IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-51539IPR000571Zinc finger, CCCH-type
SMARTSM003560.0324673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9294674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64972IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-64971IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-75071IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDSEAETSQT HMRIKTQLCR RFMQGTCPLV APQCNYAHGY HDLRTATGPR LCRMFMHTRH  60
CSYGNNCRFL HATPPLPLHH VHPQQQQHEN INFSFPQPQP GIMQNTECRI MQTSAAATTN  120
GHSSAQNNTT QSQTFSSTPA RNTSAITVAT TSLHKNGPYA GKSLSDINTM QRVIRLYADW  180
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g103290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1483401e-164AC148340.3 Medicago truncatula chromosome 2 clone mth2-22d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597853.11e-134mRNA decay activator protein ZFP36L2
TrEMBLG7IUS51e-133G7IUS5_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAES681041e-134(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-07C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]