PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104550.1
Common NameMTR_2g104550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 316aa    MW: 35506 Da    PI: 6.1179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-10137184355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR ++ ++f  L   +P +     kK++K +iL +A++Y+k Lq
  Medtr2g104550.1 137 LDHIMAERKRRLELSQKFIALSATIPGL-----KKMDKTSILGEAINYVKILQ 184
                      6799************************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-8132188No hitNo description
PROSITE profilePS5088813.586134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.33E-16138200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15139197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-11140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEQTWENWPL HSEMVDVENM QGQYCHQTST DDEEEFLRDI ILQQPVTYSG SSLSSSSEMD  60
GSDSSGKKLH LLSTPSTPRT FILSFDKSTI IPATTTPESE EVPRTKSRSN NNKRSLEPKA  120
KASNQTGKKS RSGSQCLDHI MAERKRRLEL SQKFIALSAT IPGLKKMDKT SILGEAINYV  180
KILQERVKEL EERNKRNNES TIIHKSDLCS NEHNNTSNDT NSDQDCCKSS LPDVKARVLE  240
NEVLIEIHCE KENGIEIKIL NLLENLHLIV TASSVFPFGN STLGFTIVAQ MGDEYKMKVN  300
DLVKTLQQVL LNMRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597972.10.0transcription factor bHLH18
TrEMBLG7IMB30.0G7IMB3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-30bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]