PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104560.1
Common NameMTR_2g104560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 230aa    MW: 26479.7 Da    PI: 9.2877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-115599554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     h + Er+RR+++ ++f +L  ++P +     kK +K+++L +A++Y+k+L
  Medtr2g104560.1 55 HIMSERKRRQEMAERFIQLSAMIPGL-----KKIDKVSVLGEAINYVKEL 99
                     8999**********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.0945099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-95599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1655118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-1055104No hitNo description
SuperFamilySSF474594.45E-1655114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MENWFSNMAM KGTDNSFNEK HPTLIGHCSN SVPHAANATH GKNKRVRSSW EIQGHIMSER  60
KRRQEMAERF IQLSAMIPGL KKIDKVSVLG EAINYVKELK ERISMLEQQY YERNKSTKSI  120
ISIRKFQSHP LNDNLDSNHV LPEVEAIGIE SEKELLLIKI NCEKREGILF KLLSMLENMH  180
LYVSTSSVLP FGKNTLNITI IAKMGEEYRI TIEELMTKLK QDLLKLYDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597973.11e-169transcription factor bHLH25
TrEMBLG7IMB41e-168G7IMB4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682241e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14964813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-35bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]