PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104900.1
Common NameMTR_2g104900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 248aa    MW: 27887.2 Da    PI: 8.7733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001983105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Medtr2g104900.1  83 FSCNYCQRKFYSSQALGGHQNAH 105
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-680111No hitNo description
PROSITE profilePS5015711.42783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDLLRLEPCL SNNLNISFSE KRQTENEEKK HLLLDLTLPS KDSCDDESKQ ELNLINCFDT  60
EPSMSMNSSS ESNHGNELEP RIFSCNYCQR KFYSSQALGG HQNAHKRERT MAKRGNKSAV  120
SLDFEHRYSS MASLPLHGSY KRSPSSLGIQ VHSSMIQKPS YQTPFFGLSR YCGPNQWQKL  180
PIYSQPASRN LHVEAETDGS SSLTSAIPTR SGKFSPRKVQ NGFGGYNVTS LKNKQEELQK  240
LDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465589.10.0zinc finger protein 1
TrEMBLA0A072VN980.0A0A072VN98_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004486622.15e-93(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.18e-38C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]