PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g105290.1
Common NameMTR_2g105290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20535.5 Da    PI: 7.9072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g105290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.8e-221967149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k++e +sn+ vtfskRr+g++ KA+EL+vLCd+ +a+i+fs+ +kly +
  Medtr2g105290.1 19 KKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCF 67
                     57899******************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-301170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3711171IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-261181IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-191333IPR002100Transcription factor, MADS-box
PfamPF003194.7E-222067IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-193348IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-194869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDMVNQRKKN MGRQKIEIKK VEKDSNKLVT FSKRRQGLFR KASELCVLCD VHAAIIVFSP  60
GDKLYCFGQP DTNVVLNSYI KGTTEFEDSK SAENSPTCKD YNRQYEEAQK MLETEKKKLE  120
DVQNLAKIFN KGDWWNDSID DMSSDQLEQF MVSIYELRRK LVERADELVM KQSVMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1411104191MEF2C
5f28_B1e-1411104191MEF2C
5f28_C1e-1411104191MEF2C
5f28_D1e-1411104191MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g105290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267811e-167AC126781.22 Medicago truncatula chromosome 8 clone mth2-12m15, complete sequence.
GenBankAC1743571e-167AC174357.6 Medicago truncatula chromosome 8 clone mth2-26c10, complete sequence.
GenBankBT1425421e-167BT142542.1 Medicago truncatula clone JCVI-FLMt-2F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465623.11e-129agamous-like MADS-box protein AGL62
TrEMBLA0A072VC911e-128A0A072VC91_MEDTR; Agamous-like MADS-box protein AGL62
STRINGAES844161e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-33AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]