PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g460730.1
Common NameMTR_2g460730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 364aa    MW: 41651.2 Da    PI: 8.1943
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g460730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1249105155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Medtr2g460730.1  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 105
                      57*******************99998898888888********************98 PP
2AP251.23.1e-16148199155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Medtr2g460730.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-1549114IPR016177DNA-binding domain
PfamPF008471.1E-849105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-1350113IPR001471AP2/ERF domain
SMARTSM003805.6E-1950119IPR001471AP2/ERF domain
PROSITE profilePS5103218.86150113IPR001471AP2/ERF domain
PRINTSPR003674.2E-65162IPR001471AP2/ERF domain
CDDcd000182.80E-24148209No hitNo description
SuperFamilySSF541711.05E-17148209IPR016177DNA-binding domain
PfamPF008475.7E-12148199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17149208IPR001471AP2/ERF domain
SMARTSM003801.2E-24149213IPR001471AP2/ERF domain
PROSITE profilePS5103218.334149207IPR001471AP2/ERF domain
PRINTSPR003674.2E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAKLSQQQTQ KNNARNNNNL KATNTVVVDN KVKRTRRSVP RDSPIQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQGAYDDEE AAAHAYDLAA LKYWGPDTIL NFPLCTYEIQ  120
LREMEDQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNHN NDINKISTKL IDSNPTCETS  240
FMQKFTNQEQ QGHNFIHAQD ESLNNNGDEA AITQPRTTGT TSALGLLLQS SKFKEMMEMT  300
NAADLSPTPQ KSYTFPNDIQ TYFQCDINSS TTKYGEGDDL FHDLNSFVPP LFDSDDFDLC  360
LKV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g460730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351682e-35AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence.
GenBankAC2354162e-35AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632499.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A072V7P10.0A0A072V7P1_MEDTR; AP2-type transcription factor
STRINGGLYMA04G24010.21e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-94ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]