PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g461710.1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7054.27 Da    PI: 10.4771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g461710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.51.5e-32959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss
  Medtr2g461710.1  9 KKIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSS 59
                     78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-30261IPR002100Transcription factor, MADS-box
CDDcd002652.35E-36259No hitNo description
PRINTSPR004049.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MGRGRVQLKK IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSN KGKLYEYSSD  60
PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20159159MEF2C
5f28_B3e-20159159MEF2C
5f28_C3e-20159159MEF2C
5f28_D3e-20159159MEF2C
6byy_A3e-20159159MEF2 CHIMERA
6byy_B3e-20159159MEF2 CHIMERA
6byy_C3e-20159159MEF2 CHIMERA
6byy_D3e-20159159MEF2 CHIMERA
6bz1_A3e-20159159MEF2 CHIMERA
6bz1_B3e-20159159MEF2 CHIMERA
6bz1_C3e-20159159MEF2 CHIMERA
6bz1_D3e-20159159MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.69401e-101pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g461710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527047e-99BT052704.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-I-18 unknown mRNA.
GenBankBT1435347e-99BT143534.1 Medicago truncatula clone JCVI-FLMt-8O8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464090.23e-38truncated transcription factor CAULIFLOWER A
SwissprotQ393712e-353AP1_BRAOL; Floral homeotic protein APETALA 1
TrEMBLA0A072V8F91e-37A0A072V8F9_MEDTR; MADS-box transcription factor family protein
STRINGXP_004488426.17e-37(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-37AGAMOUS-like 8