PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005220.1
Common NameMTR_3g005220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 161aa    MW: 18055 Da    PI: 5.1898
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.42e-0789125140
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 
                      ++Y +YAk+ GFs r+ ks++   ng ++ ++ vCskeg 
  Medtr3g005220.1  89 NYYVRYAKSKGFSFRMGKSRT---NGMVIGQEIVCSKEGL 125
                      69**************98666...599***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-489125IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MYKVLSILCN SILLVTILMS SHFHITGLCV LLADQEMTDM HENTTMPGCD DDILESALDA  60
DPLNDRLSSE IPSEPFEGMD FASIEDVKNY YVRYAKSKGF SFRMGKSRTN GMVIGQEIVC  120
SKEGLLQLCA GNYRRIIAIF NKITVMMQWK LPHIGYLAFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254810.0AC125481.23 Medicago truncatula clone mth2-15n13, complete sequence.
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633536.11e-105uncharacterized protein LOC11419388
TrEMBLG7IYC71e-116G7IYC7_MEDTR; FAR1 DNA-binding domain protein
STRINGAES682591e-117(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.15e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]