PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005230.1
Common NameMTR_3g005230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 260aa    MW: 30321.9 Da    PI: 7.7084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.41.2e-061381871463
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      R + +  R+RK ++i eLe+ v++L+ae  +   ele l ++   l +e+
  Medtr3g005230.1 138 RNSGQQHRARKAQYIGELERSVQALQAEGYEVSAELEFLDQQNLILGMEN 187
                      5677889*************************999999999887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-6128200No hitNo description
SuperFamilySSF579593.09E-6137188No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEISNSLPNF QDHQLPPKIS NSSRYDEICL KERLMSELGN EGGIRRHQRT YSDSMLSEQQ  60
QQEVPCWLKD LLDDEEDQKQ PSTVCSNKTH RRSSSDSLAY LNNKTILQHS PERKVVDSQP  120
SFLQQHHSRS DHSKRGKRNS GQQHRARKAQ YIGELERSVQ ALQAEGYEVS AELEFLDQQN  180
LILGMENRAL KQRLDSLSQE HFIKCLEQEV LEREITRLRN LYQQQQHKQH QQSSNNKRIM  240
VGIDLNNVKI LMHQLPNFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254810.0AC125481.23 Medicago truncatula clone mth2-15n13, complete sequence.
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598009.20.0basic leucine zipper 61
TrEMBLG7IYC80.0G7IYC8_MEDTR; Uncharacterized protein
STRINGAES682600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2717433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.22e-33bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]