PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g006370.1
Common NameMTR_3g006370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 230aa    MW: 26401 Da    PI: 7.833
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g006370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.41e-2765153290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY+eYA++vGF +r+ + ++s+r+g+i  r+f C+keg+  + + k    r++ra+tr gCka++++k +++gkw++tk++++HnH+l+
  Medtr3g006370.1  65 FYDEYARHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIQGKLGPVRKPRASTREGCKAMIHIKYDQSGKWMITKFVKDHNHPLV 153
                      9*****************************************99999****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2565153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MESRLVDRSD GAEVSGDGNL VEPNDGCRSA KSYSGRELGI SDHDNAVKEP YEGMEFVSED  60
AAKIFYDEYA RHVGFVMRVM SCRRSERDGR ILARRFGCNK EGHCVSIQGK LGPVRKPRAS  120
TREGCKAMIH IKYDQSGKWM ITKFVKDHNH PLVVSPREAR QTMDEKDKKI QELTVELRIK  180
KRLCVTYQEQ LKCYMNIVEE HSDKLSARIH HILDNLKEYE SIEELLHQT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.49300.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g006370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444250.0BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458769.11e-171protein FAR1-RELATED SEQUENCE 2
RefseqXP_024633927.11e-171protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A072UTY61e-170A0A072UTY6_MEDTR; FAR-RED impaired response-like protein
STRINGXP_004507548.11e-140(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-101FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]