PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g008240.1
Common NameMTR_3g008240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 204aa    MW: 23012.4 Da    PI: 9.1081
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g008240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.96.7e-1850157190
             FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 
                      +fY +YA+++GFsvr+  ++k+    k+++++    +vC+k+g+++ +  +             +  + ++++e+r+gCka + +k++k  +++
  Medtr3g008240.1  50 DFYGNYAYNIGFSVRTMLKSKNnsqnKKSDKVHYVCYVCNKQGFKKGSLLNsnnmptsdspvviEFVKVKEKPEERVGCKAGIYLKLDKvFNVY 143
                      6*************9865555545568889999999*********9988888899****99999888999*******************9**** PP

             FAR1  77 evtkleleHnHela 90 
                      ++++ +  H H+l 
  Medtr3g008240.1 144 KIYRWDVAHCHPLH 157
                      ************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1450157IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDLISTPSES GQLSVETSLL IHADSSQCYS PSNKESWKSL VFKTIKEIED FYGNYAYNIG  60
FSVRTMLKSK NNSQNKKSDK VHYVCYVCNK QGFKKGSLLN SNNMPTSDSP VVIEFVKVKE  120
KPEERVGCKA GIYLKLDKVF NVYKIYRWDV AHCHPLHKLE HLCYLRSFRE VNEVQGQLAL  180
INSKAGMSMR TSYEVMGQGV GGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g008240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4678120.0CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.11e-139protein FAR1-RELATED SEQUENCE 5
TrEMBLG7IVL61e-149G7IVL6_MEDTR; FAR1 DNA-binding domain protein
STRINGAES684351e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]