PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g008310.1
Common NameMTR_3g008310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 276aa    MW: 31617 Da    PI: 6.6992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g008310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013728223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C +C++sF +   L  H+++H
  Medtr3g008310.1  7 VCLICNRSFFNGKALGGHMKSH 28
                     6*******************99 PP
2zf-C2H213.50.00021244266123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C + F + ++L+ H ++H
  Medtr3g008310.1 244 HKCEYCFEIFESGELLEEHTKVH 266
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.1628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598633IPR007087Zinc finger, C2H2
PfamPF139121.4E-6730IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PfamPF139122.3E-7196215IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-5196266No hitNo description
SMARTSM0035546197217IPR015880Zinc finger, C2H2-like
SMARTSM003550.33244266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829244266IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MENNGRVCLI CNRSFFNGKA LGGHMKSHYA KLPIHSKTPI KNHVHEYSAE LAKHPTHSIS  60
TSSPSIVNPR NNSTYNPQSL KGKFSCTLSN FGRNSGFQSY RTNPTGKRSK RKPRQFHMAE  120
DREENTQFNM AEEKEENTQF NMDEEKEDNT QLQSVYSDLD IEAAETLGVI LKKEWKQIED  180
KYYTEKKKAS ENGNTVFECD ICHEVFQSGK DLFGHEKIQN KSDNLAGEIG RSGNINNVVN  240
EKVHKCEYCF EIFESGELLE EHTKVHLYNY YDSDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113RSKRKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g008310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4678120.0CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598191.10.0zinc finger protein ZAT4
TrEMBLG7IVM30.0G7IVM3_MEDTR; C2H2-type zinc-finger protein, putative
STRINGAES684420.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-11C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]