PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g015530.1
Common NameMTR_3g015530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 246aa    MW: 27968.5 Da    PI: 10.1524
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g015530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1256.2e-0875154791
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      A+++GF++++++s   +++      ++vC  +g+++ +kkk   +++ + + + +C  k++    + d+ w+++ l   HnHe++p
  Medtr3g015530.1  75 ANKAGFTITIKRSCAVSNH----ILELVCESSGEQKVSKKK--VKHEATRSRKYECLFKVRGYVVReDNAWKLAILYGVHNHEMVP 154
                      899********99998333....489***********9999..6666777888999988876555559***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-575154IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVENAGDRKP SVVEIKPPKH EVSVKVAVSV KVEATSVNAG VWKLRDNEVD TTHFFSSRET  60
WKDKDELIGW VRRQANKAGF TITIKRSCAV SNHILELVCE SSGEQKVSKK KVKHEATRSR  120
KYECLFKVRG YVVREDNAWK LAILYGVHNH EMVPFLAGHL LAGRLMEDDK KIIHDLTNSS  180
VKPKNILTNL KKKRQESMTN IKGDLTEMQF LISKTVLIMD STYKTNLYKM PLFLIVGVTS  240
TYLTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g015530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444040.0AC144404.35 Medicago truncatula chromosome 8 clone mth2-19f21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7IVX70.0G7IVX7_MEDTR; FAR1 DNA-binding domain protein
STRINGAES688110.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]