PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g021320.1

Common Name

MTR_3g021320

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 131aa MW: 14667 Da PI: 7.9243

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g021320.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	34.4	3e-11	2	72	107	181
GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 e e+ v iiD+ ++ Q ++Llq+ + ++gp++ +iTg+++ +k+ l ++ L+ A +l+ p+++n+ Medtr3g021320.1 2 ECEKVVQIIDLRCAEPDQCINLLQTSKKSQGGPHHRKITGIHE----KKDVLDQMSYHLTTKAGKLHFPLQINPT 72 667899*****************99999*********....9***********************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.0E-8	2	72	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:1903506	Biological Process	regulation of nucleic acid-templated transcription

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MECEKVVQII DLRCAEPDQC INLLQTSKKS QGGPHHRKIT GIHEKKDVLD QMSYHLTTKA 60 GKLHFPLQIN PTEVLHSLLA ADDEMAGRIS PAGPAFINLQ RAVHIGQRDF VKCLERYMIN 120 AYILSCFIQS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g021320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144341	1e-120	AC144341.25 Medicago truncatula clone mth2-22g22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513385.1	2e-51	scarecrow-like protein 3
TrEMBL	G7IZ35	1e-92	G7IZ35_MEDTR; GRAS family transcription factor
STRING	AES69063	2e-93	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	5e-18	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Medtr3g021320.1
Entrez Gene	11422318

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]