PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g022580.1
Common NameMTR_3g022580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 187aa    MW: 21812.2 Da    PI: 8.224
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g022580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.74.4e-3873183263374
             GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                      ++s+l+d+l++++ r+s er+k+E +llg++i+n+++c g +r+erhe+lekW +rle+ GF +vpls++   +a  ll++++ + y+ +ee++
  Medtr3g022580.1  73 TFSSLLDCLDSTVTRTSVERQKLESMLLGEQIKNIITCVGVDRKERHEKLEKWIRRLEMTGFVKVPLSYNGRIEATNLLQRYSHK-YKFKEEHD 165
                      689********************************************************************************77.******** PP

             GRAS 357 slvlgWkdrpLvsvSaWr 374
                      +l+ +W+drpL+svSaW+
  Medtr3g022580.1 166 CLLVCWNDRPLFSVSAWK 183
                      *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.0731164IPR005202Transcription factor GRAS
PfamPF035141.5E-3573183IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MWSAPFFLNF WDEGPHVPAV FTVIDGVHMG QRTFAEWLER DMINAYIMSP DSSLSPIFLG  60
ASPKMESFLK HCTFSSLLDC LDSTVTRTSV ERQKLESMLL GEQIKNIITC VGVDRKERHE  120
KLEKWIRRLE MTGFVKVPLS YNGRIEATNL LQRYSHKYKF KEEHDCLLVC WNDRPLFSVS  180
AWKFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1374183262375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g022580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9625060.0CT962506.16 M.truncatula DNA sequence from clone MTH2-51B22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598874.12e-92scarecrow-like protein 3
SwissprotQ9LPR86e-38SCL3_ARATH; Scarecrow-like protein 3
TrEMBLG7J1J61e-137G7J1J6_MEDTR; GRAS family transcription factor
STRINGAES691101e-138(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-40scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]