PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g022830.1
Common NameMTR_3g022830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 439aa    MW: 49706.3 Da    PI: 7.0717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g022830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.11.4e-116264365374
             GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                      L+ecA++v+sg+ + a+  L+ +s+++sp+g+ +qR+++yf eAL  +++++ +++ykal++s+ s   ss+ + ++k+f++++P+lkfs+l++
  Medtr3g022830.1  26 LIECAKCVASGSIKTADIGLEYISQISSPHGNGVQRMVTYFSEALGYKIVKHLPGVYKALNSSKIS--LSSDDILVQKYFYDLCPFLKFSYLIT 117
                      89***********************************************************99998..79************************ PP

             GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                      NqaI e++e+e+ vHiiD+  s+++QW++L+q+L +Rp+gpp l+iTg+++    +ke+le++   L+  A  l+ p++fn+ + ++led+++e
  Medtr3g022830.1 118 NQAIIESMEREKVVHIIDLHCSEPAQWINLIQTLKKRPGGPPFLKITGINE----KKEALEQMSFHLTTEAGILDFPLQFNP-IISKLEDVDFE 206
                      ***************************************************....9**************************.7999******* PP

             GRAS 193 eLrvkpgEalaVnlvlqlhrll.....................................................desvsleserdevLklvks 233
                      +L vk+g+a+a+++vlqlh+ll                                                       s ++      +L+++++
  Medtr3g022830.1 207 NLPVKTGDAVAISSVLQLHSLLatddemvsssgaasfnmqraahlgqrtfaewlerdminayilspdsalsplflGASPKMGI----FLNAMRK 296
                      *******************************************************************9999888877777777....******* PP

             GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                      l+Pk++v++eqe+++n+ ++ er+ +al++y +lfd+le+++ r+s er+k+E +llg++i+n+++ceg +r+erhe+le+W +rl++aGF +v
  Medtr3g022830.1 297 LQPKLLVITEQESNLNGCNLTERIDRALYFYGSLFDCLESTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEQWIQRLKMAGFVKV 390
                      ********************************************************************************************** PP

             GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      pls++   +a  ll++++ + y+ +ee+++l+ +W+drpL+svSaW+
  Medtr3g022830.1 391 PLSYNGRIEATNLLQRYSHK-YKFKEENDCLLVCWSDRPLFSVSAWK 436
                      ******************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.3871417IPR005202Transcription factor GRAS
PfamPF035144.7E-11426436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDSGSPYHWL RELRYDSHGS NPMIPLIECA KCVASGSIKT ADIGLEYISQ ISSPHGNGVQ  60
RMVTYFSEAL GYKIVKHLPG VYKALNSSKI SLSSDDILVQ KYFYDLCPFL KFSYLITNQA  120
IIESMEREKV VHIIDLHCSE PAQWINLIQT LKKRPGGPPF LKITGINEKK EALEQMSFHL  180
TTEAGILDFP LQFNPIISKL EDVDFENLPV KTGDAVAISS VLQLHSLLAT DDEMVSSSGA  240
ASFNMQRAAH LGQRTFAEWL ERDMINAYIL SPDSALSPLF LGASPKMGIF LNAMRKLQPK  300
LLVITEQESN LNGCNLTERI DRALYFYGSL FDCLESTVTR TSVERQKLES MLLGEQIKNI  360
ITCEGVDRKE RHEKLEQWIQ RLKMAGFVKV PLSYNGRIEA TNLLQRYSHK YKFKEENDCL  420
LVCWSDRPLF SVSAWKFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5654381380Protein SCARECROW
5b3h_D5e-5654381380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g022830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673040.0CT967304.5 M.truncatula DNA sequence from clone MTH2-36C8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598874.10.0scarecrow-like protein 3
TrEMBLG7J1L10.0G7J1L1_MEDTR; GRAS family transcription factor
STRINGAES691250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-145scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]