PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g023760.1
Common NameMTR_3g023760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 469aa    MW: 53477.3 Da    PI: 4.9915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g023760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000421234123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C ksF +  +L  H+r+H
  Medtr3g023760.1 12 HVCKFCRKSFASGKSLGGHMRSH 34
                     79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-51137No hitNo description
PfamPF139122.5E-71234IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2011239IPR007087Zinc finger, C2H2
SMARTSM003550.0181234IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801436IPR007087Zinc finger, C2H2
SMARTSM003550.3599121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38899126IPR007087Zinc finger, C2H2
SuperFamilySSF576676.5E-5100127No hitNo description
PfamPF139122.3E-7101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-4101129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.86E-5349378No hitNo description
PfamPF139121.1E-10351375IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388351378IPR007087Zinc finger, C2H2
SMARTSM003550.52351373IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEEDQEVMKL KHVCKFCRKS FASGKSLGGH MRSHDHDHDD DYDDDHDDDG DEYVVAARRR  60
MKKEEGYGLR ENPKKTWRVL TDSTNEQEIQ DPFDVVLDKL CKECGKGFQS MKALFGHMKC  120
HKKKNSFELD EEEEEEDDDS NATVLPKRKR RSKRKLRTRY NKSNTSTSVV NFGDNSLDSI  180
AESSDNSDEK EQEEVAMSLI MLSRDVRPWF GINSIAEFSD NNDDNDNDEN SLEFEAPLTH  240
LVSKIEGKKF ITNSSEIVKM NKKPKKLDFG NVVSSDVMSK GKSLEVFDND DGLKMKKARV  300
SVVENGKDEK KKMEIEVDSD LAFEVNVVDS ETKVTSEGEF RKRKYQKRGK FECATCNKKF  360
QSYQALGGHR ASHKRTKGFS ASRNDQSSEN GNSAELELEV DAEGRMVESE RVMLNEEVAE  420
MRDYLDLDLN LPAASIDDER NGHSEIYKPW WLVGSSLKQE AMVGLLSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148155KRRSKRKL
2150156RSKRKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g023760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4172092e-36EU417209.1 Trifolium repens clone CloverSSR-069_A10_040_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459056.10.0uncharacterized protein LOC25488666
TrEMBLA0A396IMP10.0A0A396IMP1_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004499492.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-20C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]