PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g025340.1
Common NameMTR_3g025340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 70aa    MW: 7939.17 Da    PI: 7.3421
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g025340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.25.1e-13156970124
             GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                      +++ ss+ + + k+fs+++P+l fs+ ++Nqa +e++e e+ vHiiD   s+++Q
  Medtr3g025340.1  15 KTSLSSDDILVKKYFSKLCPFLWFSYPITNQANVESIEYETVVHIIDAHCSEPAQ 69 
                      33458999*****************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.225169IPR005202Transcription factor GRAS
PfamPF035141.7E-101569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MCSVWKNKKV INSLKTSLSS DDILVKKYFS KLCPFLWFSY PITNQANVES IEYETVVHII  60
DAHCSEPAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g025340.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356061e-100AC135606.17 Medicago truncatula clone mth2-10j1, complete sequence.
GenBankCU1827731e-100CU182773.4 M.truncatula DNA sequence from clone MTH2-95D13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.11e-23scarecrow-like protein 3
TrEMBLG7IWF43e-43G7IWF4_MEDTR; GRAS family transcription factor
STRINGAES692054e-44(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-10scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]