PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g027430.1
Common NameMTR_3g027430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 334aa    MW: 38418 Da    PI: 10.0196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g027430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.91.6e-20194280120211
             GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211
                      +q++QW++L+q+L +Rp+gpp l+iTg+++    +ke le++   L+  A  l+ p+ fn  + ++ ed+++e+L vk g+a+a+ +vl++h
  Medtr3g027430.1 194 NQPAQWINLIQTLKKRPGGPPFLKITGIHE----KKEVLEQMSFHLTTEAGILDFPLGFNR-IISKPEDVDFENLPVKIGDAVAITSVLHMH 280
                      799***************************....9**************************.6999************************99 PP
2GRAS23.75.3e-08304330348374
             GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                       y+ +ee+++l+ +W+drpL+svSaW+
  Medtr3g027430.1 304 KYKFKEENDCLLVCWSDRPLFSVSAWK 330
                      599***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.5E-18194280IPR005202Transcription factor GRAS
PfamPF035141.8E-5304330IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1903506Biological Processregulation of nucleic acid-templated transcription
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSASLALHE PLLTNKIAFS NIALKFVQVL FSSKQKGLRH AQENTLILKT MRNSIHINVF  60
KSASAVYFEA FKGYVRMMCC FKVGYQETRE LVAFPLDLLI NQRLRLHLLL FNFVQKFASL  120
QCINWLKHTS FTHSNPISLL IECAKSFPSG SKKMQDISLS PHIRRKHHCL QTTSLFRNTS  180
MNCPFLKFSY LITNQPAQWI NLIQTLKKRP GGPPFLKITG IHEKKEVLEQ MSFHLTTEAG  240
ILDFPLGFNR IISKPEDVDF ENLPVKIGDA VAITSVLHMH LGEQIKNIIA CEGVDRKERH  300
ENHKYKFKEE NDCLLVCWSD RPLFSVSAWK FRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g027430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0105150.0CT010515.8 M.truncatula DNA sequence from clone MTH2-146B21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598874.12e-52scarecrow-like protein 3
TrEMBLG7IWG60.0G7IWG6_MEDTR; GRAS family transcription factor
STRINGAES693250.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-25scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]