PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g027650.2
Common NameMTR_3g027650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 363aa    MW: 40468.5 Da    PI: 5.4661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g027650.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.2e-05334358630
                      HHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   6 nerErrRRdriNsafeeLrellPka 30 
                      +++Er RR ri +++ +L+ l Pk+
  Medtr3g027650.2 334 SIAERVRRTRISDRIKKLQGLFPKS 358
                      689*****************99984 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGAMYEELRR NQEMDSSSII HSKQHYQQQN SGLLMRYNSA PTSLFTNLID NNAQNFINNE  60
ESFTNESYLP STSSEMDTML SKLISSNNGW NNSEENLQEF DVKPVKQEIG ESVAQQNGNY  120
SYGGSELIYQ GFSNGSGNGF YGSFGGVNTM ESDDSNQSKI GVRNCSNLIR QKSSPAEFFS  180
NENGFATLTL REVESFKANG ISNGTLNFSS RPSTCLKRMP QIAENGIQSL ESNCDQTINL  240
VNENGSSKFT NEFWDNSAFN AHKTENEDEI MFSTTNGLDS QEADFGYQNL GLTHHLSLPS  300
SSTKMTSMEK FLQVQGSVPC KIRAKRGFAT HPRSIAERVR RTRISDRIKK LQGLFPKSDK  360
VF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.21760.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g027650.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1401870.0BT140187.1 Medicago truncatula clone JCVI-FLMt-20F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599090.20.0transcription factor bHLH130
RefseqXP_013459160.10.0transcription factor bHLH130
TrEMBLA0A072UUY20.0A0A072UUY2_MEDTR; Transcription factor bHLH122-like protein
STRINGAES693410.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-24bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]