PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g030230.1
Common NameMTR_3g030230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 173aa    MW: 19707.6 Da    PI: 10.9243
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g030230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.57.7e-07711303090
             FAR1  30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      + ++vC ++g+++  k+k   +++ + + + gC  kl+    + d+ w+++ l+  HnHe++
  Medtr3g030230.1  71 MLELVCERSGEPNVPKRK--VKHEATRSRKFGCLFKLHGYVVReDNAWKLAILNGVHNHEMV 130
                      5689*********99998..7777888999*******97666559***************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQVMIPVIEN LMLSIPLRLK LPLRLKLPLK LRLQASISKW TQLISFRLEI HGKIKTNCSV  60
GFVDKQIGNA MLELVCERSG EPNVPKRKVK HEATRSRKFG CLFKLHGYVV REDNAWKLAI  120
LNGVHNHEMV QYVAGHLLAG RLMEGDKKIV HDLTDSSMKP KNILTNLKKK RK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g030230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0302431e-177CT030243.8 M.truncatula DNA sequence from clone MTH2-72K5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642273.16e-45uncharacterized protein LOC11442646
TrEMBLG7IWP71e-122G7IWP7_MEDTR; FAR1 DNA-binding domain protein
STRINGAES694601e-123(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]