PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g031220.1
Common NameMTR_3g031220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 509aa    MW: 56911.3 Da    PI: 6.8436
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g031220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32198255260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver   d++++ei+Y+g+Hnh+k
  Medtr3g031220.1 198 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERGL-DGQITEIVYKGSHNHPK 255
                      8****************************************.***************85 PP
2WRKY105.33.2e-33364422159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+H+h+
  Medtr3g031220.1 364 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHTHD 422
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-28193256IPR003657WRKY domain
SuperFamilySSF1182904.45E-25195256IPR003657WRKY domain
SMARTSM007742.2E-35197255IPR003657WRKY domain
PfamPF031063.1E-25198254IPR003657WRKY domain
PROSITE profilePS5081123.594198256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37349424IPR003657WRKY domain
SuperFamilySSF1182904.18E-29356424IPR003657WRKY domain
PROSITE profilePS5081137.447359424IPR003657WRKY domain
SMARTSM007743.8E-39364423IPR003657WRKY domain
PfamPF031065.9E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MTSSFFSDLL NSPTDQNLKD TERSQNHVLS DQNRLGLPPK FKSTPPPSLP LSPTPLFSPS  60
SYFSIPPGFS LSELLDSPVL LNSSHILPSP TTGSFANNQG FNWKNNYEEK QENVKAEEET  120
ISSSFSFQAQ PAGFQSSNAI VQNGWSMVKA ENSSSMQSFT PESNSTSEQN NYNKSGSQSN  180
YNNYQSQPQV QILSRRSDDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT KKKVERGLDG  240
QITEIVYKGS HNHPKPVANK RNTNSMSSSS LSHANPPPSN HFGNEIQMDL VATPENSSIS  300
IGDDEFEQTS HKSGGDHDQY CEDEPDAKKW RIEGENEGIS LGVGNRTVRE PRVVVQTTSD  360
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERASQDLRA VITTYEGKHT  420
HDVPAPRGSG NHSINKPLPI QTTMNNTNNS INNTSVNNGF FNHEMMQNNG FTVDSYMNMN  480
QQRVNNIIRG RAKEEPVEDD SFFESFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34179425378Probable WRKY transcription factor 4
2lex_A2e-34179425378Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g031220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6421300.0KP642130.1 Medicago sativa WRKY I type transcription factor 33 (WRKY33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599287.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-128WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLG7IWX50.0G7IWX5_MEDTR; Putative transcription factor WRKY family
STRINGAES695380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]