PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g031240.1
Common NameMTR_3g031240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21667.6 Da    PI: 5.7004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g031240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.5e-151150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i n+snr  tf +R+ngi+K  +ELS+LC++e++ ii  +
  Medtr3g031240.1 11 ITNNSNRRLTFRRRKNGIMKMIKELSILCGIEACAIISDE 50
                     89*********************************99655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.474147IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-21160IPR002100Transcription factor, MADS-box
CDDcd002662.42E-26285No hitNo description
SuperFamilySSF554552.35E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRRKVEIAY ITNNSNRRLT FRRRKNGIMK MIKELSILCG IEACAIISDE NHHEAEVWPS  60
PTEVVNVLSR FKNLSEHEQG KRMLDLESYL KQRIEKTQDQ YHKLKMENKK KEMAGYIEKY  120
MCTKEFNFGD AHLTNPNDFT DFINEQLKEV KQKLDSMDFQ AQEDSIDFDD IDFDPNEFYL  180
ATP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVEIAYITNNSNRRLTFRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g031240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6515990.0CU651599.5 M.truncatula DNA sequence from clone MTH2-116D19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599289.11e-136agamous-like MADS-box protein AGL80
TrEMBLG7J0M21e-135G7J0M2_MEDTR; MADS-box transcription factor family protein
STRINGAES695401e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-31M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]