PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g039810.1
Common NameMTR_3g039810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 86aa    MW: 9347.49 Da    PI: 8.8418
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g039810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.82.6e-331673260
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                     +++rY eC+kNhAa++Gg+avDGC+Efm+s + egt+ al+CaACgCHRnFHRrev++e
  Medtr3g039810.1 16 RNIRYGECQKNHAANIGGYAVDGCREFMAS-TGEGTSGALTCAACGCHRNFHRREVQTE 73
                     579**************************9.6778********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-29182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-301870IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.9E-271970IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4852069IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MKKRQVVAKT SSSITRNIRY GECQKNHAAN IGGYAVDGCR EFMASTGEGT SGALTCAACG  60
CHRNFHRREV QTEVVCEYSP PNYSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24141e-145glandular trichome| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g039810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1472011e-142AC147201.19 Medicago truncatula clone mth2-117n1, complete sequence.
GenBankBT1430071e-142BT143007.1 Medicago truncatula clone JCVI-FLMt-2L7 unknown mRNA.
GenBankCU0248961e-142CU024896.7 M.truncatula DNA sequence from clone MTH2-150P22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599659.16e-58mini zinc finger protein 3
SwissprotQ2Q4936e-39MIF3_ARATH; Mini zinc finger protein 3
TrEMBLG7IXD41e-56G7IXD4_MEDTR; Mini zinc finger protein
STRINGAES699102e-57(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.13e-41mini zinc finger
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]