PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g044820.1
Common NameMTR_3g044820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 212aa    MW: 24096.5 Da    PI: 8.8965
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g044820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-114373333
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLee 33
                     e k  rr+++NReAAr+sR+RKka++++Le+
  Medtr3g044820.1 43 EHKTLRRLMQNREAARKSRLRKKAYVQQLEN 73
                     56889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-44194IPR004827Basic-leucine zipper domain
PfamPF001708.9E-94374IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0024387IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-84587No hitNo description
Gene3DG3DSA:1.20.5.1709.9E-94782No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141447.2E-26137210IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKSGNVLIFR CLSTVSWCNG VGNEALVVVE SKDQCKTKGQ SDEHKTLRRL MQNREAARKS  60
RLRKKAYVQQ LENSRLRLAQ IEHELQQVRQ QGTFVGIGVT ADHGHSIVGN VMQYFKPSGS  120
VAFDMDYARW VDEHERQIND IRSAINSQMG DNELHLLLVD GVMVHYDELY KLKSIGAKAD  180
VFHILSGLWK TPAERCFMWL GGFRSSELYH S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g044820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630929.11e-127transcription factor PERIANTHIA-like
SwissprotQ0JNL36e-76TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBLG7J1821e-156G7J182_MEDTR; Transcription factor HBP-1b(C1) protein, putative
STRINGAES700191e-157(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1588759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.18e-77bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]