PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g050390.1
Common NameMTR_3g050390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 243aa    MW: 27442.2 Da    PI: 7.8947
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g050390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-0795117325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      + lC+ ++ + +C+yGd+C F H
  Medtr3g050390.1  95 MGLCKKYYNGEECPYGDTCIFLH 117
                      669******66***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-123367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-73365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0043461IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-53460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-792121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-794121IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-494117IPR000571Zinc finger, CCCH-type
SMARTSM003560.2294119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.57397120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTFPMNKRRR ISEKNYSNAF ICPPPSNKET GSIFFKTRIC HKFKFGNCPK GEHCTYAHGV  60
GEIRQPPANW KDLAGPRNEE WMQFLDDDEK IIHKMGLCKK YYNGEECPYG DTCIFLHRLR  120
EDSWKSREAC ALSIGSIGDG SNNLEGNRSV NKPARGTYWK IKLCPIGDDC HYAYGEADVL  180
PVSANDATTS IPASLGIAKE VEQAKKKPLL WWKLNTKINT IYADWIDDSS LVFPNLPSAE  240
EI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g050390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8687350.0CT868735.12 M.truncatula DNA sequence from clone MTH2-10O19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600003.20.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT814e-47C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLG7J1X00.0G7J1X0_MEDTR; Zinc finger CCCH domain protein
STRINGAES702541e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-49C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]