PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g052920.1
Common NameMTR_3g052920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26328.1 Da    PI: 10.1057
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g052920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.54.1e-241664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+i+n+sn qvtfskRr g++KKA+EL++LC+a+va+i+fs+  k++ +
  Medtr3g052920.1 16 KKISNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSF 64
                     68*****************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-35867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.609868IPR002100Transcription factor, MADS-box
CDDcd002651.14E-37977No hitNo description
SuperFamilySSF554551.7E-29984IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-201030IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSGRKSRGR QKIEIKKISN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALIVFSPGEK  60
VFSFGHPNLD AVIDRYLSRV PPQNYGTMQF IEAHRSANVR ELNTQLTQTN QLLDIEKKRA  120
EELIHLRKTV ETQFWWAGPI DGMNQAQLEL FKKALDELKK IVDHHVDRLV IQGAPTQTFP  180
FFVGSNSSFN MPLHHQLNPP QAQMLPAQFY QNPMLQPHLF GFNNIGGGGG NGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17987280MEF2 CHIMERA
6byy_B5e-17987280MEF2 CHIMERA
6byy_C5e-17987280MEF2 CHIMERA
6byy_D5e-17987280MEF2 CHIMERA
6bz1_A5e-17987280MEF2 CHIMERA
6bz1_B5e-17987280MEF2 CHIMERA
6bz1_C5e-17987280MEF2 CHIMERA
6bz1_D5e-17987280MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g052920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470100.0AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459823.11e-175agamous-like MADS-box protein AGL62
TrEMBLA0A072UVN61e-174A0A072UVN6_MEDTR; MADS-box transcription factor family protein
TrEMBLA0A396IQX11e-174A0A396IQX1_MEDTR; Putative transcription factor MADS-type1 family
STRINGAET025831e-146(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-57AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]