PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g053690.1
Common NameMTR_3g053690
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 226aa    MW: 24233.9 Da    PI: 7.386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g053690.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202575155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +gr++AeIrdp +   ++r++lg+f+tae+Aa+a++ a+++l+g
  Medtr3g053690.1 25 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDTAEQAARAYDTAARNLRG 75
                     68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-142575IPR001471AP2/ERF domain
CDDcd000186.49E-302583No hitNo description
PROSITE profilePS5103224.212683IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-222684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-332684IPR001471AP2/ERF domain
SMARTSM003802.3E-362689IPR001471AP2/ERF domain
PRINTSPR003673.2E-112738IPR001471AP2/ERF domain
PRINTSPR003673.2E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGNGATAT TAAEPGSNPV FFKEPRYRGV RKRPWGRFAA EIRDPLKKAR VWLGTFDTAE  60
QAARAYDTAA RNLRGPKAKT NFPLQQPFYH NLDAAGDPFS DQRFFTGAGA GVVAGEYQDH  120
RRPTSSGMSS TVESFSGPRP FLPPAIPSAV TGRRYPRTPP VAPEDCRSDC DSSSSVVDDG  180
DNDNAASSVM LSFKRAPLPF DLNAPPLEDA DVAGGEDLHC TVLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212385265ATERF1
3gcc_A2e-212385265ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.23971e-131root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g053690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5436612e-59EU543661.1 Vicia faba putative ethylene responsive factor (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635459.11e-164ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-52ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A072UXV41e-163A0A072UXV4_MEDTR; Ethylene response factor
STRINGXP_004513889.11e-114(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-51ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]