PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g056100.5
Common NameMTR_3g056100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 452aa    MW: 49541.5 Da    PI: 6.7189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g056100.5genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-3199156260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Medtr3g056100.5  99 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 156
                      8****************************************.***************85 PP
2WRKY106.71.2e-33270328159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Medtr3g056100.5 270 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 328
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.34293157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-2694157IPR003657WRKY domain
SuperFamilySSF1182901.44E-2496157IPR003657WRKY domain
SMARTSM007744.5E-3398156IPR003657WRKY domain
PfamPF031063.9E-2499155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-38255330IPR003657WRKY domain
SuperFamilySSF1182901.57E-29262330IPR003657WRKY domain
PROSITE profilePS5081138.825265330IPR003657WRKY domain
SMARTSM007743.1E-39270329IPR003657WRKY domain
PfamPF031062.5E-26271328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVPADFYNHA CEQSTQIDGQ GNVKSFVSSA LVKSETAVPS DEISLSSSPV QMISSGASAH  60
VEVDLDESNP SGSKATGLQV SQVDGRGNGL SVAADKASDD GYNWRKYGQK LVKGCEFPRS  120
YYKCTHPNCE VKKLFERSHD GQITEIVYKG THDHPKPQPS RRFSGGNMMS VQEERSDRAS  180
LTSRDDKDFN NYGQMSHAAE RDSTPELSPI AANDGSPEGA GFLSNQNNDE VDEDDPFSKR  240
RKMDLDITPV VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNAG  300
CPVRKHVERA SHDPKAVITT YEGKHNHDVP TARHNSHDMA GPSAAGGQTR IRHEESDTIS  360
LDLGMGLSPT AENRPNSLGR MMRNEYGDSQ THNGNSSFKF VHSSTPPPVY FGVLNNSANP  420
YGSRENPSDS SSLNRSAYPC PQNMGRIIMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3799330877Probable WRKY transcription factor 4
2lex_A3e-3799330877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.206160.0glandular trichome| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g056100.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610580.0CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600259.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-152WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLG7J2090.0G7J209_MEDTR; Putative transcription factor WRKY family
STRINGAES705100.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-155WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]