PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g056750.1
Common NameMTR_024s0001, MTR_3g056750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 99aa    MW: 11457.1 Da    PI: 9.5391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g056750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.7e-143480251
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51
                     +y+GVr  k + r+ +eI d +++n    +++l +++tae+Aa+a++a   
  Medtr3g056750.1 34 RYRGVRKTK-NSRYNVEIADpWKKN---GYVWLCTYDTAEQAARAYDATTI 80
                     59****888.8*********88766...5******************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.9333493IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-153481IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-113484IPR016177DNA-binding domain
CDDcd000185.17E-133477No hitNo description
PfamPF008471.6E-103482IPR001471AP2/ERF domain
SMARTSM003803.1E-53494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEESTYETKP NPIAKPSCKM KFKQVQNKIP KEIRYRGVRK TKNSRYNVEI ADPWKKNGYV  60
WLCTYDTAEQ AARAYDATTI SYINLCFFPK EYELASAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g056750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454280.16e-13ethylene-responsive transcription factor 3
TrEMBLG7ZVC61e-66G7ZVC6_MEDTR; Ethylene response factor
STRINGAES831642e-67(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-15ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]