PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g060200.6
Common NameMTR_3g060200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 411aa    MW: 44885.2 Da    PI: 4.7329
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g060200.6genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-145086135
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++C   +  Tpl+R+gp g+ktLCnaCG+ ++kk++
  Medtr3g060200.6 50 CQHCVDNEnnTPLMRHGPAGEKTLCNACGIVWAKKRK 86
                     ****777777************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-104497IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-94592No hitNo description
Gene3DG3DSA:3.30.50.103.4E-134891IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.73E-134996No hitNo description
PfamPF003202.3E-125086IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MKRIRRDTSM MRQKNRQFKS LKQIPDFSKC DSTLSAGRDS SRNPTSLRRC QHCVDNENNT  60
PLMRHGPAGE KTLCNACGIV WAKKRKLRDL SKGRVDLSVE QSDLDALIDV NVVEGELPAI  120
QNEQNPLVDV NITYFEGELS VIQNEQVISD DHSKAVAGKG SNNTSNPCDE GISEDPSRAL  180
GVEGSNNHAL SPCEDALIDV NVVEGELPAI QKEQGIAEDP SKGIIVELEG SSTHALNPCD  240
KPMKSYTFSE IIATAESLLA FLDKDLPSAS EVDYTSSRAK YRRIVLETTT VAGQTVRNDI  300
TRRMMDLPVP LQQIIEAWLD VLASGVETPS EDSSERPLRT TFSEPPRSRE TFVHPATPRS  360
VVAATGDEVG PSTSRVVQEE PVGEEVPVVV PEPVVSPQLN SIHSSHLIQS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g060200.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8965480.0CU896548.1 M.truncatula DNA sequence from clone MTH2-36A5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635990.11e-172uncharacterized protein LOC11445335 isoform X2
RefseqXP_024635991.11e-172uncharacterized protein LOC11445335 isoform X3
TrEMBLA0A072UXB60.0A0A072UXB6_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES705971e-164(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.28e-16ZIM-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]