PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061300.1
Common NameMTR_140s0013, MTR_3g061300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 128aa    MW: 14510.8 Da    PI: 10.1845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-1431122196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ff++l+++ +l+++r+++p         ++ ++ + ++ +   rsW++kl  y+  ++   l++GW+ F+++ gL++gD++vF+l+++++  ++
  Medtr3g061300.1  31 FFTILINPTHLAENRVCVPTLNG----VIE-NKEKYVMLQIGKRSWNLKLlPYCEARNVRRLSAGWSLFARESGLQAGDVCVFELINKKDLVFN 119
                      88999999999999999886543....222.2336889999*********44566666678************************988887666 PP

                      EEE CS
               B3  94 vkv 96 
                      +++
  Medtr3g061300.1 120 IHI 122
                      665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1527125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-1427125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82931126IPR003340B3 DNA binding domain
PfamPF023622.9E-1131122IPR003340B3 DNA binding domain
CDDcd100176.50E-1331124No hitNo description
SMARTSM010193.6E-631126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MKTSERTTSW NWPKGARAQE VALKFISTNP FFTILINPTH LAENRVCVPT LNGVIENKEK  60
YVMLQIGKRS WNLKLLPYCE ARNVRRLSAG WSLFARESGL QAGDVCVFEL INKKDLVFNI  120
HITKSDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095111e-135CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634637.17e-68B3 domain-containing transcription factor VRN1
TrEMBLG8A2Z99e-90G8A2Z9_MEDTR; B3 DNA-binding domain protein
STRINGAES706991e-90(Medicago truncatula)
STRINGAES858371e-90(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-14related to vernalization1 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]